TF JASPAR ID Class Family Tax Group IC GC Content Target gene hits Target gene non-hits Background gene hits Background gene non-hits Target TFBS hits Target TFBS nucleotide rate Background TFBS hits Background TFBS nucleotide rate Z-score Fisher score Nkx2-5 MA0063.1 Helix-Turn-Helix Homeo vertebrates 8.270 0.218 363 49 16973 7779 8955 0.0508 197210 0.0384 72.091 45.231 HOXA5 MA0158.1 Helix-Turn-Helix Homeo vertebrates 8.759 0.315 365 47 17629 7123 8904 0.0578 205993 0.0458 63.571 38.072 ARID3A MA0151.1 Helix-Turn-Helix Arid vertebrates 9.896 0.062 347 65 16086 8666 7472 0.0364 166235 0.0277 58.424 40.094 Pdx1 MA0132.1 Helix-Turn-Helix Homeo vertebrates 9.040 0.194 345 67 15507 9245 6423 0.0312 140973 0.0235 56.770 46.283 SRY MA0084.1 Other Alpha-Helix High Mobility Group vertebrates 9.193 0.238 333 79 14714 10038 4586 0.0335 101929 0.0255 56.195 45.062 Foxd3 MA0041.1 Winged Helix-Turn-Helix Forkhead vertebrates 12.945 0.223 294 118 11354 13398 2286 0.0222 49535 0.0165 49.887 56.639 Prrx2 MA0075.1 Helix-Turn-Helix Homeo vertebrates 9.063 0.027 341 71 15063 9689 5640 0.0229 123270 0.0171 49.120 48.499 Sox5 MA0087.1 Other Alpha-Helix High Mobility Group vertebrates 10.831 0.199 306 106 13087 11665 3358 0.0191 72042 0.014 47.677 41.825 FOXD1 MA0031.1 Winged Helix-Turn-Helix Forkhead vertebrates 11.926 0.275 318 94 13087 11665 2921 0.0189 62921 0.014 46.905 53.971 Nobox MA0125.1 Helix-Turn-Helix Homeo vertebrates 9.573 0.260 325 87 13558 11194 3484 0.0226 77190 0.0172 46.522 54.128 FOXA1 MA0148.1 Winged Helix-Turn-Helix Forkhead vertebrates 12.533 0.332 311 101 13355 11397 2803 0.025 63112 0.0193 46.099 42.742 TBP MA0108.2 Beta-sheet TATA-binding vertebrates 10.086 0.377 282 130 10389 14363 1558 0.0189 33775 0.0141 45.919 60.493 FOXO3 MA0157.1 Winged Helix-Turn-Helix Forkhead vertebrates 11.734 0.298 318 94 13611 11141 3133 0.0203 69410 0.0154 44.085 45.892 FOXI1 MA0042.1 Winged Helix-Turn-Helix Forkhead vertebrates 13.183 0.263 296 116 11680 13072 2210 0.0215 49366 0.0165 44.008 53.338 Foxa2 MA0047.2 Winged Helix-Turn-Helix Forkhead vertebrates 13.268 0.315 290 122 11656 13096 1951 0.019 43535 0.0145 41.470 47.694 Foxq1 MA0040.1 Winged Helix-Turn-Helix Forkhead vertebrates 14.070 0.202 231 181 8007 16745 1074 0.00958 22088 0.00675 38.345 50.795 NKX3-1 MA0124.1 Helix-Turn-Helix Homeo vertebrates 11.127 0.179 298 114 12654 12098 3039 0.0172 68823 0.0134 37.318 40.553 SOX9 MA0077.1 Other Alpha-Helix High Mobility Group vertebrates 9.079 0.358 275 137 11417 13335 1879 0.0137 41403 0.0104 36.834 37.564 CEBPA MA0102.2 Zipper-Type Leucine Zipper vertebrates 8.712 0.358 321 91 12828 11924 2437 0.0178 55606 0.0139 36.773 61.670 NFATC2 MA0152.1 Ig-fold Rel vertebrates 9.859 0.346 335 77 15176 9576 4069 0.0231 97757 0.019 33.176 40.513 Sox17 MA0078.1 Other Alpha-Helix High Mobility Group vertebrates 10.502 0.384 311 101 13879 10873 2746 0.02 65883 0.0165 31.078 35.585 Gfi MA0038.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 9.470 0.391 318 94 13731 11021 2715 0.022 65844 0.0183 30.807 44.136 Lhx3 MA0135.1 Helix-Turn-Helix Homeo vertebrates 16.354 0.131 193 219 5806 18946 609 0.00642 12758 0.00461 29.684 55.414 Gata1 MA0035.2 Zinc-coordinating GATA vertebrates 10.878 0.373 326 86 14350 10402 3027 0.027 75905 0.0232 28.011 43.173 NFIL3 MA0025.1 Zipper-Type Leucine Zipper vertebrates 14.139 0.265 200 212 6731 18021 734 0.00655 15828 0.00484 27.342 44.270 IRF1 MA0050.1 Winged Helix-Turn-Helix IRF vertebrates 16.008 0.383 183 229 6075 18677 536 0.00522 11517 0.00384 24.682 40.537 SPIB MA0081.1 Winged Helix-Turn-Helix Ets vertebrates 9.060 0.466 371 41 17547 7205 6720 0.0381 175639 0.0342 24.320 46.548 HLF MA0043.1 Zipper-Type Leucine Zipper vertebrates 11.147 0.394 179 233 5508 19244 471 0.00458 9969 0.00332 24.278 47.487 FOXF2 MA0030.1 Winged Helix-Turn-Helix Forkhead vertebrates 14.824 0.334 143 269 4097 20655 312 0.00354 6459 0.00251 22.818 41.797 HNF1B MA0153.1 Helix-Turn-Helix Homeo vertebrates 16.821 0.222 129 283 4107 20645 327 0.00318 6910 0.0023 20.319 29.034 Pou5f1 MA0142.1 Helix-Turn-Helix Homeo vertebrates 14.808 0.308 116 296 3402 21350 242 0.00294 5205 0.00217 18.462 31.090 Ddit3::Cebpa MA0019.1 Zipper-Type Leucine Zipper vertebrates 11.652 0.483 173 239 5576 19176 427 0.00415 9754 0.00325 17.591 40.557 ELF5 MA0136.1 Winged Helix-Turn-Helix Ets vertebrates 8.693 0.429 354 58 16547 8205 4357 0.0318 117435 0.0294 15.960 41.092 MEF2A MA0052.1 Other Alpha-Helix MADS vertebrates 15.709 0.179 209 203 7006 17746 646 0.00524 15631 0.00434 15.101 47.716 Pax4 MA0068.1 Helix-Turn-Helix Homeo vertebrates 11.004 0.441 8 404 112 24640 9 0.000219 113 9.42e-05 14.226 7.103 HNF1A MA0046.1 Helix-Turn-Helix Homeo vertebrates 15.548 0.259 115 297 3044 21708 194 0.0022 4352 0.00169 13.745 37.940 Nkx3-2 MA0122.1 Helix-Turn-Helix Homeo vertebrates 8.542 0.463 332 80 15425 9327 3367 0.0246 91612 0.0229 12.320 34.310 SPI1 MA0080.2 Winged Helix-Turn-Helix Ets vertebrates 9.640 0.435 353 59 15792 8960 3536 0.0201 95792 0.0186 11.802 51.199 Sox2 MA0143.1 Other Alpha-Helix High Mobility Group vertebrates 12.951 0.361 92 320 2809 21943 166 0.00202 3844 0.0016 11.561 22.016 AP1 MA0099.2 Zipper-Type Leucine Zipper vertebrates 9.193 0.405 348 64 16390 8362 4139 0.0235 113253 0.022 11.071 36.951 Nr2e3 MA0164.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 12.028 0.373 178 234 6354 18398 506 0.00287 12287 0.00239 10.954 31.788 FEV MA0156.1 Winged Helix-Turn-Helix Ets vertebrates 12.121 0.442 346 66 15402 9350 2993 0.0194 81722 0.0182 10.376 48.991 E2F1 MA0024.1 Winged Helix-Turn-Helix E2F vertebrates 13.838 0.625 228 184 8113 16639 690 0.00448 17630 0.00392 9.889 46.123 Tal1::Gata1 MA0140.1 Zipper-Type Helix-Loop-Helix vertebrates 11.297 0.451 168 244 6212 18540 427 0.00623 11200 0.0056 9.372 26.346 RXRA::VDR MA0074.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 20.451 0.527 25 387 453 24299 26 0.000316 475 0.000198 9.301 14.710 RORA_2 MA0072.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 17.425 0.369 121 291 3571 21181 206 0.00234 5079 0.00198 9.059 32.180 YY1 MA0095.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 8.101 0.510 355 57 17190 7562 5908 0.0287 165054 0.0275 8.309 33.379 STAT1 MA0137.2 Ig-fold Stat vertebrates 13.119 0.452 180 232 6394 18358 418 0.00508 10990 0.00458 8.270 32.755 RUNX1 MA0002.2 Ig-fold Runt vertebrates 10.401 0.502 307 105 13641 11111 2098 0.0187 58648 0.0179 6.578 35.210 MAX MA0058.1 Zipper-Type Helix-Loop-Helix vertebrates 12.685 0.571 205 207 7993 16759 590 0.00478 15900 0.00442 6.119 28.984 IRF2 MA0051.1 Winged Helix-Turn-Helix IRF vertebrates 21.134 0.412 35 377 844 23908 39 0.000569 923 0.000462 5.539 13.479 RELA MA0107.1 Ig-fold Rel vertebrates 14.757 0.567 195 217 7171 17581 506 0.0041 13690 0.0038 5.383 32.901 RREB1 MA0073.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 22.278 0.623 56 356 1520 23232 72 0.00117 1839 0.00102 5.046 17.050 PBX1 MA0070.1 Helix-Turn-Helix Homeo vertebrates 14.641 0.310 126 286 4107 20645 249 0.00242 6634 0.00221 4.971 26.616 Evi1 MA0029.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 17.909 0.280 70 342 1931 22821 95 0.00108 2457 0.000956 4.391 20.603 REL MA0101.1 Ig-fold Rel vertebrates 10.515 0.559 253 159 10514 14238 1045 0.00847 29250 0.00813 4.269 31.879 T MA0009.1 Beta-Hairpin-Ribbon T vertebrates 17.863 0.452 59 353 1811 22941 82 0.000731 2114 0.000646 3.706 13.897 Myb MA0100.1 Helix-Turn-Helix Myb vertebrates 9.883 0.591 317 95 13518 11234 2056 0.0133 58600 0.013 3.033 46.261 Arnt::Ahr MA0006.1 Zipper-Type Helix-Loop-Helix vertebrates 9.532 0.715 315 97 13597 11155 2320 0.0113 66086 0.011 2.856 43.130 Pax6 MA0069.1 Helix-Turn-Helix Homeo vertebrates 13.798 0.432 44 368 1218 23534 52 0.00059 1377 0.000536 2.602 13.065 TLX1::NFIC MA0119.1 Helix-Turn-Helix::Other Homeo::Nuclear Factor I-CCAAT-binding vertebrates 19.665 0.598 37 375 1066 23686 44 0.000499 1162 0.000452 2.457 10.327 Hand1::Tcfe2a MA0092.1 Zipper-Type Helix-Loop-Helix vertebrates 10.144 0.507 297 115 13286 11466 1904 0.0154 54768 0.0152 1.992 31.407 Arnt MA0004.1 Zipper-Type Helix-Loop-Helix vertebrates 10.992 0.642 183 229 7052 17700 493 0.0024 13904 0.00232 1.846 25.689 EWSR1-FLI1 MA0149.1 Winged Helix-Turn-Helix Ets vertebrates 32.871 0.554 8 404 207 24545 8 0.000117 209 0.000105 1.284 3.656 Ar MA0007.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 15.703 0.498 19 393 534 24218 20 0.000357 554 0.000339 1.068 6.167 TAL1::TCF3 MA0091.1 Zipper-Type Helix-Loop-Helix vertebrates 14.070 0.453 177 235 7491 17261 510 0.00496 14681 0.0049 1.060 16.903 NR3C1 MA0113.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 14.749 0.432 78 334 2522 22230 108 0.00158 3161 0.00158 -0.144 16.174 TEAD1 MA0090.1 Helix-Turn-Helix Homeo vertebrates 15.678 0.507 145 267 5222 19530 285 0.00277 8446 0.00282 -0.914 23.766 SRF MA0083.1 Other Alpha-Helix MADS vertebrates 17.965 0.466 27 385 908 23844 33 0.000321 1019 0.00034 -1.151 5.698 RXR::RAR_DR5 MA0159.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 16.004 0.535 37 375 1313 23439 49 0.000675 1499 0.000708 -1.381 6.440 NFE2L2 MA0150.1 Zipper-Type Leucine Zipper vertebrates 14.394 0.486 143 269 5635 19117 300 0.00268 8970 0.00274 -1.410 17.239 RORA_1 MA0071.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 13.190 0.424 214 198 8624 16128 632 0.00512 18895 0.00525 -1.940 27.303 MZF1_5-13 MA0057.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 9.400 0.588 318 94 13425 11327 2628 0.0213 77649 0.0216 -2.048 48.683 MIZF MA0131.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 13.197 0.610 64 348 2080 22672 79 0.000641 2497 0.000694 -2.264 13.137 Pax5 MA0014.1 Helix-Turn-Helix Homeo vertebrates 12.432 0.575 36 376 1224 23528 43 0.000697 1364 0.000758 -2.466 7.013 TP53 MA0106.1 Zinc-coordinating Loop-Sheet-Helix vertebrates 26.239 0.603 0 412 8 24744 0 0 8 4.45e-06 -2.555 0.000 USF1 MA0093.1 Zipper-Type Helix-Loop-Helix vertebrates 11.290 0.643 220 192 9330 15422 727 0.00413 21993 0.00428 -2.585 22.998 NR1H2::RXRA MA0115.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 27.878 0.445 2 410 99 24653 2 2.76e-05 100 4.72e-05 -3.244 0.705 Stat3 MA0144.1 Ig-fold Stat vertebrates 13.601 0.505 251 161 9883 14869 779 0.00632 23645 0.00657 -3.494 38.860 PLAG1 MA0163.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 19.352 0.798 55 357 1971 22781 75 0.000851 2462 0.000958 -3.834 8.819 NR4A2 MA0160.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 10.165 0.491 310 102 13896 10856 1991 0.0129 60034 0.0133 -4.168 34.500 NR2F1 MA0017.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 15.924 0.478 95 317 3735 21017 159 0.0018 5073 0.00197 -4.228 11.070 NF-kappaB MA0061.1 Ig-fold Rel vertebrates 13.345 0.621 217 195 8381 16371 611 0.00495 18865 0.00524 -4.432 32.708 Spz1 MA0111.1 Other Other vertebrates 11.907 0.538 177 235 6658 18094 397 0.00354 12530 0.00383 -5.203 26.685 CREB1 MA0018.2 Zipper-Type Leucine Zipper vertebrates 10.139 0.523 225 187 9204 15548 627 0.00407 19712 0.00438 -5.299 27.834 Egr1 MA0162.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 14.456 0.739 181 231 6364 18388 379 0.00338 12188 0.00373 -6.296 34.023 ESR1 MA0112.2 Zinc-coordinating Hormone-nuclear Receptor vertebrates 13.563 0.594 7 405 345 24407 7 0.000114 355 0.000197 -6.656 1.035 PPARG MA0066.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 20.365 0.523 0 412 62 24690 0 0 64 3.56e-05 -6.699 0.000 NFYA MA0060.1 Other Alpha-Helix NFY CCAAT-binding vertebrates 12.925 0.523 157 255 5865 18887 292 0.00379 9476 0.00421 -7.289 23.340 znf143 MA0088.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 17.541 0.530 33 379 1301 23451 38 0.000616 1473 0.000819 -7.874 4.388 HIF1A::ARNT MA0259.1 Zipper-Type Helix-Loop-Helix vertebrates 9.740 0.657 269 143 10914 13838 1188 0.00771 37662 0.00837 -8.121 39.458 NHLH1 MA0048.1 Zipper-Type Helix-Loop-Helix vertebrates 14.132 0.674 153 259 5783 18969 294 0.00286 9874 0.00329 -8.379 21.720 REST MA0138.2 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 23.134 0.596 3 409 232 24520 3 5.11e-05 242 0.000141 -8.462 0.298 NFKB1 MA0105.1 Ig-fold Rel vertebrates 15.627 0.758 95 317 3946 20806 176 0.00157 6372 0.00195 -9.528 8.996 Esrrb MA0141.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 12.806 0.524 244 168 10167 14585 816 0.00794 26346 0.00878 -10.063 29.542 ELK1 MA0028.1 Winged Helix-Turn-Helix Ets vertebrates 8.812 0.568 321 91 13642 11110 1733 0.0141 54748 0.0152 -10.538 48.504 HNF4A MA0114.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 9.617 0.522 162 250 6389 18363 327 0.00345 11240 0.00406 -10.719 20.069 MYC::MAX MA0059.1 Zipper-Type Helix-Loop-Helix vertebrates 14.237 0.602 82 330 3436 21316 115 0.00103 4535 0.00139 -10.771 7.541 CTCF MA0139.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 17.205 0.645 88 324 3236 21516 106 0.00163 3982 0.0021 -11.388 12.791 ESR2 MA0258.1 Zinc-coordinating Hormone-nuclear Receptor vertebrates 13.618 0.546 46 366 2219 22533 65 0.000949 2670 0.00134 -11.774 2.588 ELK4 MA0076.1 Winged Helix-Turn-Helix Ets vertebrates 14.123 0.583 148 264 6034 18718 249 0.00182 9342 0.00234 -11.952 15.757 ZEB1 MA0103.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 8.305 0.557 371 41 17454 7298 5432 0.0264 171132 0.0285 -14.042 47.981 Myc MA0147.1 Zipper-Type Helix-Loop-Helix vertebrates 11.157 0.686 196 216 8288 16464 518 0.0042 18476 0.00513 -14.517 19.559 Mycn MA0104.2 Zipper-Type Helix-Loop-Helix vertebrates 11.104 0.699 196 216 8332 16420 532 0.00431 18928 0.00526 -14.529 19.098 PPARG::RXRA MA0065.2 Zinc-coordinating Hormone-nuclear Receptor vertebrates 11.663 0.547 142 270 6067 18685 301 0.00366 11080 0.00462 -15.686 12.288 Myf MA0055.1 Zipper-Type Helix-Loop-Helix vertebrates 15.914 0.609 232 180 10157 14595 804 0.00782 27519 0.00918 -15.764 21.583 INSM1 MA0155.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 14.862 0.667 182 230 7588 17164 491 0.00478 17685 0.0059 -16.244 18.746 MZF1_1-4 MA0056.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 8.586 0.725 363 49 16863 7889 6329 0.0308 201000 0.0335 -16.789 46.889 GABPA MA0062.2 Winged Helix-Turn-Helix Ets vertebrates 13.335 0.647 231 181 9355 15397 579 0.00516 20927 0.0064 -17.171 30.260 ZNF354C MA0130.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 8.958 0.615 361 51 17566 7186 6465 0.0315 207738 0.0346 -19.329 34.568 EBF1 MA0154.1 Zipper-Type Helix-Loop-Helix vertebrates 11.564 0.648 273 139 11288 13464 1113 0.00902 39149 0.0109 -19.850 37.646 Zfp423 MA0116.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 17.925 0.679 129 283 5691 19061 247 0.003 10149 0.00423 -20.985 9.490 Tcfcp2l1 MA0145.1 Other CP2 vertebrates 11.650 0.609 243 169 10591 14161 892 0.0101 32190 0.0125 -23.940 23.892 SP1 MA0079.2 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 11.129 0.820 297 115 12391 12361 2304 0.0187 79797 0.0222 -26.336 43.382 Zfx MA0146.1 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 13.077 0.749 232 180 9872 14880 863 0.0098 33238 0.0129 -30.808 24.701 Klf4 MA0039.2 Zinc-coordinating BetaBetaAlpha-zinc finger vertebrates 12.618 0.771 322 90 13645 11107 2389 0.0194 88731 0.0247 -37.849 49.509